Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015928592.1_cds_XP_016476152.1_68014
CDS Infomation

[gene=LOC107797740] [db_xref=GeneID:107797740] [protein=proton pump-interactor 1-like] [protein_id=XP_016476152.1] [location=join(50826..51191,51676..51870,51987..52166,52829..53023,53540..53638,53857..54417,54719..55012)] [gbkey=CDS]
Sequence

ATGGGTATAGATGTGGGATCTCAGTTAGCCCATATTTTAGCTGAAACTGGTATTGAACAG
AACAACATTCTGAAAGAAAATGGGAAAATGAATCATGTTGCCGGGGTTACCGATCCCGTA
AAATTTGGCTCTCATGGTACTGAAGAACCAATTAAGGAGGAACGGAAGAGAGTTCCTTTA
ATCAGCCTCCGGGAAAATGCAGTTGATGAATGGCCTCAAGAAAAACAGGTCCATTCTTTC
TACATTGTCAAATATCGGAGATTTGAAGACCAAAAGCTGAAGTCCAAAATAGAACAGGCC
GAAATCGAGCTACAGAAAAAGAACAAAGCAAAATCGCAGATTATTGAAAAATTAAAGCTC
ATAAGGGCAGATAGAGCGCAGCTCATTGAGCAAAGGAAATCTCTAAGAGCTGAGAATCAG
CAGTTTTGGACAAAGATTGATGAGAAAAGAAAGGAAGTCAAACCGCTGCACGATGCCTTG
GGCGAGCTCCGTGGTGCTAGGAATACCGGCACAGAGAGGGGTTATAGTCTGTGTTCATCT
GAGGAGGAGCTTAACAATCTCATCAAAAGCCTGGAGTACCGCATTCAACATGAAAGCATT
CCTCTGAATGAAGAGAAGCAAATTCTCAGGGAAATCAAGCTACTTGAAGGAACAAGGGAA
AATGTTAAAAAGAATGCTGCTACGAGAGCAGATATTCTGGAATCGAAAGGTGACAAGGAA
TCAATTCAAAACCAGGTCAAACTTATAAGTGTTGACTTAGATGGAGTCCGTAAGGAGCAA
CAGGTGGTAAAGGCCAAGCTTAAGAAACTGGATGATCACATTGATGACATAACAAAGCAG
ATCAAGTCATTGGATGAGGAAGTGAAGGAAATAGTACAGAAGAGAGAAAGCACTTACGAA
CATATTCTTGAATTGAGAAAACAACGTGATGAAGGGAATTCTCCTTTCTACAAAAACTCC
ACGATGTTACAGAAAGCCAAACAGCTTGCAGATAAGAAGGATATTGAAGCCCTTAAAGAA
CTTTCACTGATGGAGGTCGAGAACTTCATGTCTCTCTGGAGTGTTGATAAGGCTTTTAGA
GATGATTACGGGAGGAGAATTTTGGCATCGCTTGACATTAGGCAGTTGAGCAAGGATGGC
AGGATGAGGAACCCTGATGAGAAGCCTCTAGTGTCACCAGAGGCGCGGACTGCGTCACAG
ACAGAGGTTGCACGGAGAACTAATGTGAATCCACCAAAGGAAGATCCCATCTCTACCGCA
AAACTTGATGCTTCCTCGACACGGGAGGTACAAAAAGAGAAGAATAGCAAGGAGCTGAAA
GATGCAAATGGCAAAAACGCGAGTACTCTGACAGAAGATTTTGATTTCATTGATGGCAAC
GAAGAAGTCTATGGTTTAGAAAAGCTACCCGAGGATACTAATGTCAAGCGGAACAGTGTT
GATGAAGTAAAATTGAGAGAGATGAAGAGAGAAGAGGAAATAGCAAAAAATAGGCAGGCA
ATGGAGAGGAAGAAGAAGTTGGCTGAGAAAGCAGCTGCTAAAGCAGCATTAAAAGCTCAG
AAAGAAGCTGAAAGGATAGCTGAAAAGAAGCTCAAGGACCTTGAAAAGAAAGCGAGGAGA
AAGGCTGGTGCTGTTGTTACAGGTCAGGATCCTATAGTGGATCCAACTGAGACAGCTGAG
GAAGAGAAGGCGGAGGAAAAGGTTGAAACTCCGGTAGGCCCTAAGATCAAGGAGCGCAAA
GAGAACATTGTTAGGCATAGAGCAAAAGGCTCGGAGATTCCTAAAGTAATATTAAAATGC
AAGAAGGGAAGAAACTACTGGCAGTGTGCTGCTCCTGCCGCTCTGGTGTTGCTGTTACTT
CTTGTCGCGGCATACAAGTATGTACTCTAG

Peptide Sequence

PEP ID

XP_016476152.1
PEP Infomation

PREDICTED: proton pump-interactor 1-like [Nicotiana tabacum]
Sequence

MGIDVGSQLAHILAETGIEQNNILKENGKMNHVAGVTDPVKFGSHGTEEPIKEERKRVPL
ISLRENAVDEWPQEKQVHSFYIVKYRRFEDQKLKSKIEQAEIELQKKNKAKSQIIEKLKL
IRADRAQLIEQRKSLRAENQQFWTKIDEKRKEVKPLHDALGELRGARNTGTERGYSLCSS
EEELNNLIKSLEYRIQHESIPLNEEKQILREIKLLEGTRENVKKNAATRADILESKGDKE
SIQNQVKLISVDLDGVRKEQQVVKAKLKKLDDHIDDITKQIKSLDEEVKEIVQKRESTYE
HILELRKQRDEGNSPFYKNSTMLQKAKQLADKKDIEALKELSLMEVENFMSLWSVDKAFR
DDYGRRILASLDIRQLSKDGRMRNPDEKPLVSPEARTASQTEVARRTNVNPPKEDPISTA
KLDASSTREVQKEKNSKELKDANGKNASTLTEDFDFIDGNEEVYGLEKLPEDTNVKRNSV
DEVKLREMKREEEIAKNRQAMERKKKLAEKAAAKAALKAQKEAERIAEKKLKDLEKKARR
KAGAVVTGQDPIVDPTETAEEEKAEEKVETPVGPKIKERKENIVRHRAKGSEIPKVILKC
KKGRNYWQCAAPAALVLLLLLVAAYKYVL

Transcript Sequence

Gene sequence data has not been registered.